postmd package

Subpackages

• postmd.analysis package
  • Submodules
  • postmd.analysis.base module
  • postmd.analysis.dielelctric_constant module
  • postmd.analysis.diffusion_coefficient module
  • postmd.analysis.shear_viscosity module
• postmd.animate package
  • AppendAnimate
    • AppendAnimate.show()
    • AppendAnimate.save()
  • CumAnimate
    • CumAnimate.show()
    • CumAnimate.save()
  • Submodules
  • postmd.animate.animate module
    • BaseAnimate
      • BaseAnimate.show()
      • BaseAnimate.save()
    • AppendAnimate
      • AppendAnimate.show()
      • AppendAnimate.save()
    • CumAnimate
      • CumAnimate.show()
      • CumAnimate.save()
• postmd.avechunk package
  • Bin1d
    • Bin1d.read_file()
    • Bin1d.apply_function()
  • Submodules
  • postmd.avechunk.bin1d module
    • Bin1d
      • Bin1d.read_file()
      • Bin1d.apply_function()
• postmd.avetime package
  • Submodules
  • postmd.avetime.avetime module
    • AveTime
      • AveTime.read_file()
    • GreenKubo
      • GreenKubo.calc_acf()
      • GreenKubo.integrate_acf()
      • GreenKubo.write_results()
      • GreenKubo.finite_size_correct_friction_coeff()
• postmd.dump package
• postmd.log package
  • LogFile
    • LogFile.set_path()
    • LogFile.get_lammps_version()
    • LogFile.extract_thermodata()
  • Submodules
  • postmd.log.dir module
  • postmd.log.logfile module
    • LogFile
      • LogFile.set_path()
      • LogFile.get_lammps_version()
      • LogFile.extract_thermodata()
• postmd.plumed package
  • Submodules
  • postmd.plumed.metad module
  • postmd.plumed.us module
• postmd.system package
  • MDFile
    • MDFile.read_file()
  • Submodules
  • postmd.system.mdfile module
    • MDFile
      • MDFile.read_file()
• postmd.utils package
  • calc_replicas_mean_std()
  • calc_box_length()
  • create_dir()
  • cummean()
  • stats_mean_std_bins()
  • judge_file()
  • judge_dir()
  • calc_acf()
  • judge_plateau()
  • backup()
  • mapdim2col()
  • Submodules
  • postmd.utils.utils module
    • mapdim2col()
    • calc_replicas_mean_std()
    • calc_box_length()
    • create_dir()
    • backup()
    • cummean()
    • stats_mean_std_bins()
    • judge_file()
    • judge_dir()
    • calc_acf()
    • judge_plateau()