Index

A

AppendAnimate (class in postmd.animate), [1] (class in postmd.animate.animate)

apply_function() (postmd.avechunk.Bin1d method) (postmd.avechunk.bin1d.Bin1d method) AveTime (class in postmd.avetime.avetime)

B

backup() (in module postmd.utils), [1] (in module postmd.utils.utils)

BaseAnimate (class in postmd.animate.animate) Bin1d (class in postmd.avechunk) (class in postmd.avechunk.bin1d)

C

calc_acf() (in module postmd.utils), [1] (in module postmd.utils.utils) (postmd.avetime.avetime.GreenKubo method) calc_box_length() (in module postmd.utils), [1] (in module postmd.utils.utils) calc_replicas_mean_std() (in module postmd.utils), [1] (in module postmd.utils.utils)

create_dir() (in module postmd.utils), [1] (in module postmd.utils.utils) CumAnimate (class in postmd.animate), [1] (class in postmd.animate.animate) cummean() (in module postmd.utils), [1] (in module postmd.utils.utils)

E

extract_thermodata() (postmd.log.LogFile method) (postmd.log.logfile.LogFile method)

F

finite_size_correct_friction_coeff() (postmd.avetime.avetime.GreenKubo method)

G

get_lammps_version() (postmd.log.LogFile method) (postmd.log.logfile.LogFile method)

GreenKubo (class in postmd.avetime.avetime)

I

integrate_acf() (postmd.avetime.avetime.GreenKubo method)

J

judge_dir() (in module postmd.utils), [1] (in module postmd.utils.utils) judge_file() (in module postmd.utils), [1] (in module postmd.utils.utils)

judge_plateau() (in module postmd.utils), [1] (in module postmd.utils.utils)

L

LogFile (class in postmd.log) (class in postmd.log.logfile)

M

mapdim2col() (in module postmd.utils), [1] (in module postmd.utils.utils) MDFile (class in postmd.system) (class in postmd.system.mdfile) module postmd postmd.animate postmd.animate.animate postmd.avechunk postmd.avechunk.bin1d postmd.avetime.avetime postmd.dump postmd.log postmd.log.dir postmd.log.logfile postmd.plumed postmd.plumed.metad postmd.plumed.us postmd.system postmd.system.mdfile postmd.utils, [1] postmd.utils.utils

P

postmd module postmd.animate module postmd.animate.animate module postmd.avechunk module postmd.avechunk.bin1d module postmd.avetime.avetime module postmd.dump module postmd.log module postmd.log.dir module

postmd.log.logfile module postmd.plumed module postmd.plumed.metad module postmd.plumed.us module postmd.system module postmd.system.mdfile module postmd.utils module, [1] postmd.utils.utils module

R

read_file() (postmd.avechunk.Bin1d method) (postmd.avechunk.bin1d.Bin1d method) (postmd.avetime.avetime.AveTime method) (postmd.system.MDFile method) (postmd.system.mdfile.MDFile method)

S

save() (postmd.animate.animate.AppendAnimate method) (postmd.animate.animate.BaseAnimate method) (postmd.animate.animate.CumAnimate method) (postmd.animate.AppendAnimate method), [1] (postmd.animate.CumAnimate method), [1] set_path() (postmd.log.LogFile method) (postmd.log.logfile.LogFile method)

show() (postmd.animate.animate.AppendAnimate method) (postmd.animate.animate.BaseAnimate method) (postmd.animate.animate.CumAnimate method) (postmd.animate.AppendAnimate method), [1] (postmd.animate.CumAnimate method), [1] stats_mean_std_bins() (in module postmd.utils), [1] (in module postmd.utils.utils)

W

write_results() (postmd.avetime.avetime.GreenKubo method)